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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 11 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
BMCBI
2005
152views more  BMCBI 2005»
15 years 4 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
EKAW
2010
Springer
15 years 3 months ago
Mobile Cultural Heritage Guide: Location-Aware Semantic Search
In this paper we explore the use of location aware mobile devices for searching and browsing a large number of general and cultural heritage information repositories. Based on GPS ...
Chris J. van Aart, Bob J. Wielinga, Willem Robert ...
ICCV
2011
IEEE
14 years 4 months ago
Complementary Hashing for Approximate Nearest Neighbor Search
Recently, hashing based Approximate Nearest Neighbor (ANN) techniques have been attracting lots of attention in computer vision. The data-dependent hashing methods, e.g., Spectral...
Hao Xu, Jingdong Wang, Zhu Li, Gang Zeng, Shipeng ...