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RECOMB
2007
Springer
16 years 6 months ago
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
Rohit Singh, Jinbo Xu, Bonnie Berger
178
Voted
SOSP
2009
ACM
16 years 3 months ago
Quincy: fair scheduling for distributed computing clusters
This paper addresses the problem of scheduling concurrent jobs on clusters where application data is stored on the computing nodes. This setting, in which scheduling computations ...
Michael Isard, Vijayan Prabhakaran, Jon Currey, Ud...
LCTRTS
2010
Springer
16 years 28 days ago
Operation and data mapping for CGRAs with multi-bank memory
Coarse Grain Reconfigurable Architectures (CGRAs) promise high performance at high power efficiency. They fulfil this promise by keeping the hardware extremely simple, and movi...
Yongjoo Kim, Jongeun Lee, Aviral Shrivastava, Yunh...
DSD
2008
IEEE
166views Hardware» more  DSD 2008»
16 years 17 days ago
Pearson - based Analysis of Positioning Error Distribution in Wireless Sensor Networks
Abstract—In two recent contributions [1], [2], we have provided a comparative analysis of various optimization algorithms, which can be used for atomic location estimation, and s...
Stefano Tennina, Marco Di Renzo, Fabio Graziosi, F...
GECCO
2007
Springer
160views Optimization» more  GECCO 2007»
16 years 8 days ago
Hill climbing on discrete HIFF: exploring the role of DNA transposition in long-term artificial evolution
We show how a random mutation hill climber that does multilevel selection utilizes transposition to escape local optima on the discrete Hierarchical-If-And-Only-If (HIFF) problem....
Susan Khor