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» Logic-Based Modeling in Systems Biology
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BMCBI
2006
205views more  BMCBI 2006»
14 years 12 months ago
Application of Petri net based analysis techniques to signal transduction pathways
Background: Signal transduction pathways are usually modelled using classical quantitative methods, which are based on ordinary differential equations (ODEs). However, some diffic...
Andrea Sackmann, Monika Heiner, Ina Koch
CSB
2004
IEEE
112views Bioinformatics» more  CSB 2004»
15 years 3 months ago
Reasoning about Molecular Similarity and Properties
Ascertaining the similarity amongst molecules is a fundamental problem in biology and drug discovery. Since similar molecules tend to have similar biological properties, the notio...
Rahul Singh
ISMB
1997
15 years 1 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
WABI
2005
Springer
124views Bioinformatics» more  WABI 2005»
15 years 5 months ago
Reconstructing Metabolic Networks Using Interval Analysis
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
Warwick Tucker, Vincent Moulton
ALIFE
2005
14 years 11 months ago
Flexible Couplings: Diffusing Neuromodulators and Adaptive Robotics
Recent years have seen the discovery of freely diffusing gaseous neurotransmitters, such as nitric oxide (NO), in biological nervous systems. A type of artificial neural network (A...
Andrew Philippides, Phil Husbands, Tom Smith, Mich...