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DNA
2011
Springer
227views Bioinformatics» more  DNA 2011»
13 years 9 months ago
Cooperative Assembly Systems
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Vincent Danos, Heinz Koeppl, John Wilson-Kanamori
WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
15 years 2 months ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
TSD
1999
Springer
15 years 2 months ago
Prague Dependency Treebank: Restoration of Deletions
The use of the treebank as a resource for linguistic research has led us to look for an annotation scheme representing not only surface syntactic information (in ‘analytic trees...
Eva Hajicová, Ivana Kruijff-Korbayová...
EVOW
2007
Springer
15 years 1 months ago
Dinucleotide Step Parameterization of Pre-miRNAs Using Multi-objective Evolutionary Algorithms
MicroRNAs (miRNAs) form a large functional family of small noncoding RNAs and play an important role as posttranscriptional regulators, by repressing the translation of mRNAs. Rece...
Jin-Wu Nam, In-Hee Lee, Kyu Baek Hwang, Seong-Bae ...
BMCBI
2010
202views more  BMCBI 2010»
14 years 10 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader