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» Logspace Complexity of Functions and Structures
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ENTCS
2007
122views more  ENTCS 2007»
14 years 9 months ago
Plugging a Space Leak with an Arrow
The implementation of conceptually continuous signals in functional reactive programming (FRP) is studied in detail. We show that recursive signals in standard implementations usi...
Hai Liu, Paul Hudak
VLSID
2003
IEEE
78views VLSI» more  VLSID 2003»
15 years 10 months ago
Interface Design Techniques for Single-Chip Systems
This paper quantifies the performance of typical functional unit interface designs in single-chip systems. We introduce a specific equation to guide the design of optimal module i...
Robert H. Bell Jr., Lizy Kurian John
WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
14 years 8 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
BMCBI
2007
153views more  BMCBI 2007»
14 years 10 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
ISBRA
2007
Springer
15 years 4 months ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...