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ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
15 years 3 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
IPPS
2006
IEEE
15 years 4 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
BIOCOMP
2007
14 years 11 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
ICDE
2009
IEEE
290views Database» more  ICDE 2009»
15 years 11 months ago
GraphSig: A Scalable Approach to Mining Significant Subgraphs in Large Graph Databases
Graphs are being increasingly used to model a wide range of scientific data. Such widespread usage of graphs has generated considerable interest in mining patterns from graph datab...
Sayan Ranu, Ambuj K. Singh
SIGMOD
2000
ACM
159views Database» more  SIGMOD 2000»
15 years 2 months ago
DLFM: A Transactional Resource Manager
The DataLinks technology developed at IBM Almaden Research Center and now available in DB2 UDB 5.2 introduces a new data type called DATALINK for a database to reference and manag...
Hui-I Hsiao, Inderpal Narang