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» MAGIC Tool: integrated microarray data analysis
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ECLIPSE
2006
ACM
15 years 3 months ago
XPlainer-Eclipse: explaining XPath within Eclipse
The popularity of XML has motivated the development of novel XML processing tools many of which embed the XPath language for XML querying, transformation, constraint specificatio...
John W. S. Liu, Mariano P. Consens, Flavio Rizzolo
BMCBI
2008
184views more  BMCBI 2008»
14 years 9 months ago
"TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI
Background: Protein-amide proton hydrogen-deuterium exchange (HDX) is used to investigate protein conformation, conformational changes and surface binding sites for other molecule...
Pornpat Nikamanon, Elroy Pun, Wayne Chou, Marek D....
BMCBI
2008
78views more  BMCBI 2008»
14 years 10 months ago
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome f
Background: There is accumulating evidence that the milieu of repeat elements and other nongenic sequence features at a given chromosomal locus, here defined as the genome environ...
Derek Huntley, Y. Amy Tang, Tatyana B. Nesterova, ...
BMCBI
2007
154views more  BMCBI 2007»
14 years 10 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller
BMCBI
2006
150views more  BMCBI 2006»
14 years 9 months ago
Cluster analysis of protein array results via similarity of Gene Ontology annotation
Background: With the advent of high-throughput proteomic experiments such as arrays of purified proteins comes the need to analyse sets of proteins as an ensemble, as opposed to t...
Cheryl Wolting, C. Jane McGlade, David Tritchler