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    BMCBI
    2007
    134views more  BMCBI 2007»
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    14 years 10 months ago
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
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    Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
    Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
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    BMCBI
    2006
    170views more  BMCBI 2006»
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
    14 years 10 months ago
    Biclustering of gene expression data by non-smooth non-negative matrix factorization
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    Background: The extended use of microarray technologies has enabled the generation and accumulation of gene expression datasets that contain expression levels of thousands of gene...
    Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Fra...
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    BMCBI
    2010
    161views more  BMCBI 2010»
    GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs
    14 years 10 months ago
    GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs
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    Background: Genome-wide expression studies have developed exponentially in recent years as a result of extensive use of microarray technology. However, expression signals are typi...
    Alberto Risueño, Celia Fontanillo, Marcel E...
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    PR
    2006
    116views more  PR 2006»
    Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data
    14 years 9 months ago
    Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data
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    Clustering algorithms are routinely used in biomedical disciplines, and are a basic tool in bioinformatics. Depending on the task at hand, there are two most popular options, the ...
    Stefano Rovetta, Francesco Masulli
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    BMCBI
    2007
    112views more  BMCBI 2007»
    Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
    14 years 10 months ago
    Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
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    Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
    Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
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