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» MODBASE, a database of annotated comparative protein structu...
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NAR
2000
121views more  NAR 2000»
14 years 9 months ago
The RESID Database of protein structure modifications: 2000 update
The RESID Database contains supplemental information on post-translational modifications for the standardized annotations appearing in the PIR-International Protein Sequence Datab...
John S. Garavelli
NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 21 days ago
MIPS: curated databases and comprehensive secondary data resources in 2010
The Munich Information Center for Protein Sequences (MIPS at the Helmholtz Center for Environmental Health, Neuherberg, Germany) has many years of experience in providing annotate...
Hans-Werner Mewes, Andreas Ruepp, Fabian J. Theis,...
BMCBI
2008
130views more  BMCBI 2008»
14 years 10 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
CICLING
2007
Springer
15 years 1 months ago
Rule-Based Protein Term Identification with Help from Automatic Species Tagging
In biomedical articles, terms often refer to different protein entities. For example, an arbitrary occurrence of term p53 might denote thousands of proteins across a number of spec...
Xinglong Wang
BMCBI
2010
136views more  BMCBI 2010»
14 years 10 months ago
Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfa
Background: Many newly detected point mutations are located in protein-coding regions of the human genome. Knowledge of their effects on the protein's 3D structure provides i...
Hanka Venselaar, Tim A. H. te Beek, Remko K. P. Ku...