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BMCBI
2010
139views more  BMCBI 2010»
14 years 11 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
CONCURRENCY
2002
116views more  CONCURRENCY 2002»
14 years 11 months ago
Parallel implementation of the fluid particle model for simulating complex fluids in the mesoscale
Dissipative particle dynamics (DPD) and its generalization - fluid particle model (FPM) - represent the "fluid particle" approach for simulating fluid-like behavior in t...
Krzysztof Boryczko, Witold Dzwinel, David A. Yuen
PVLDB
2008
123views more  PVLDB 2008»
14 years 11 months ago
Efficient implementation of sorting on multi-core SIMD CPU architecture
Sorting a list of input numbers is one of the most fundamental problems in the field of computer science in general and high-throughput database applications in particular. Althou...
Jatin Chhugani, Anthony D. Nguyen, Victor W. Lee, ...
TPDS
2010
174views more  TPDS 2010»
14 years 10 months ago
Parallel Two-Sided Matrix Reduction to Band Bidiagonal Form on Multicore Architectures
The objective of this paper is to extend, in the context of multicore architectures, the concepts of tile algorithms [Buttari et al., 2007] for Cholesky, LU, QR factorizations to t...
Hatem Ltaief, Jakub Kurzak, Jack Dongarra
ICPPW
2009
IEEE
14 years 9 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...