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BMCBI
2010
139views more  BMCBI 2010»
13 years 6 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
CONCURRENCY
2002
116views more  CONCURRENCY 2002»
13 years 6 months ago
Parallel implementation of the fluid particle model for simulating complex fluids in the mesoscale
Dissipative particle dynamics (DPD) and its generalization - fluid particle model (FPM) - represent the "fluid particle" approach for simulating fluid-like behavior in t...
Krzysztof Boryczko, Witold Dzwinel, David A. Yuen
PVLDB
2008
123views more  PVLDB 2008»
13 years 5 months ago
Efficient implementation of sorting on multi-core SIMD CPU architecture
Sorting a list of input numbers is one of the most fundamental problems in the field of computer science in general and high-throughput database applications in particular. Althou...
Jatin Chhugani, Anthony D. Nguyen, Victor W. Lee, ...
TPDS
2010
174views more  TPDS 2010»
13 years 4 months ago
Parallel Two-Sided Matrix Reduction to Band Bidiagonal Form on Multicore Architectures
The objective of this paper is to extend, in the context of multicore architectures, the concepts of tile algorithms [Buttari et al., 2007] for Cholesky, LU, QR factorizations to t...
Hatem Ltaief, Jakub Kurzak, Jack Dongarra
ICPPW
2009
IEEE
13 years 4 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...