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2009
Tsinghua U.
15 years 11 months ago
Dynamic topology aware load balancing algorithms for molecular dynamics applications
Molecular Dynamics applications enhance our understanding of biological phenomena through bio-molecular simulations. Large-scale parallelization of MD simulations is challenging b...
Abhinav Bhatele, Laxmikant V. Kalé, Sameer ...
IRREGULAR
1997
Springer
15 years 8 months ago
Parallel Shared-Memory State-Space Exploration in Stochastic Modeling
Stochastic modeling forms the basis for analysis in many areas, including biological and economic systems, as well as the performance and reliability modeling of computers and comm...
Susann C. Allmaier, Graham Horton
AIIA
2007
Springer
15 years 8 months ago
Advanced Tree-Based Kernels for Protein Classification
One of the aims of modern Bioinformatics is to discover the molecular mechanisms that rule the protein operation. This would allow us to understand the complex processes involved i...
Elisa Cilia, Alessandro Moschitti
PSB
2001
15 years 5 months ago
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
This paper discusses the issues involved in implementing a dynamic programming algorithm for biological sequence comparison on a generalpurpose parallel computing platform based o...
W. S. Martins, Juan del Cuvillo, F. J. Useche, Kev...
BMCBI
2010
113views more  BMCBI 2010»
15 years 4 months ago
Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information
Background: Flavin binding proteins (FBP) plays a critical role in several biological functions such as electron transport system (ETS). These flavoproteins contain very tightly b...
Nitish K. Mishra, Gajendra P. S. Raghava