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» Managing large datasets with iRODS - a performance analyses
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BMCBI
2010
125views more  BMCBI 2010»
14 years 9 months ago
In-silico prediction of blood-secretory human proteins using a ranking algorithm
Background: Computational identification of blood-secretory proteins, especially proteins with differentially expressed genes in diseased tissues, can provide highly useful inform...
Qi Liu, Juan Cui, Qiang Yang, Ying Xu
BMCBI
2008
138views more  BMCBI 2008»
14 years 9 months ago
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions
Background: The power of haplotype-based methods for association studies, identification of regions under selection, and ancestral inference, is well-established for diploid organ...
Shu-Yi Su, Jonathan White, David J. Balding, Lachl...
KDD
2006
ACM
164views Data Mining» more  KDD 2006»
15 years 10 months ago
Sampling from large graphs
Given a huge real graph, how can we derive a representative sample? There are many known algorithms to compute interesting measures (shortest paths, centrality, betweenness, etc.)...
Jure Leskovec, Christos Faloutsos
BMCBI
2011
14 years 1 months ago
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
Background: The implementation of high throughput sequencing for exploring biodiversity poses high demands on bioinformatics applications for automated data processing. Here we in...
Surendra Kumar, Tor Carlsen, Bjørn-Helge Me...
CIKM
2011
Springer
13 years 9 months ago
Semantic data markets: a flexible environment for knowledge management
We present Nyaya, a system for the management of Semantic-Web data which couples a general-purpose and extensible storage mechanism with efficient ontology reasoning and querying ...
Roberto De Virgilio, Giorgio Orsi, Letizia Tanca, ...