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BMCBI
2008
140views more  BMCBI 2008»
15 years 5 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
BMCBI
2005
162views more  BMCBI 2005»
15 years 4 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ICSE
2008
IEEE-ACM
16 years 5 months ago
Design patterns: between programming and software design
In computer science curricula the two areas programming and software engineering are usually separated. In programming students learn an object oriented language and then deepen t...
Christoph Denzler, Dominik Gruntz
VMCAI
2010
Springer
16 years 2 months ago
Temporal Reasoning for Procedural Programs
While temporal verification of programs is a topic with a long history, its traditional basis--semantics based on word languages--is illsuited for modular reasoning about procedura...
Rajeev Alur, Swarat Chaudhuri
PDP
2009
IEEE
15 years 11 months ago
Task-Parallel versus Data-Parallel Library-Based Programming in Multicore Systems
—Multicore machines are becoming common. There are many languages, language extensions and libraries devoted to improve the programmability and performance of these machines. In ...
Diego Andrade, Basilio B. Fraguela, James C. Brodm...