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BMCBI
2008
168views more  BMCBI 2008»
15 years 5 months ago
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements
Background: Since experimental determination of protein folding pathways remains difficult, computational techniques are often used to simulate protein folding. Most current techn...
Qingwu Yang, Sing-Hoi Sze
TCBB
2010
104views more  TCBB 2010»
15 years 3 months ago
Fast Hinge Detection Algorithms for Flexible Protein Structures
— Analysis of conformational changes is one of the keys to the understanding of protein functions and interactions. For the analysis, we often compare two protein structures, tak...
Tetsuo Shibuya
BMCBI
2011
14 years 11 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
CVPR
2005
IEEE
16 years 7 months ago
Stereo Correspondence by Dynamic Programming on a Tree
Dynamic programming on a scanline is one of the oldest and still popular methods for stereo correspondence. While efficient, its performance is far from the state of the art becau...
Olga Veksler
DAC
2009
ACM
16 years 6 months ago
Optimal static WCET-aware scratchpad allocation of program code
Caches are notorious for their unpredictability. It is difficult or even impossible to predict if a memory access will result in a definite cache hit or miss. This unpredictabilit...
Heiko Falk, Jan C. Kleinsorge