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BMCBI
2011
14 years 1 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
JPDC
2011
219views more  JPDC 2011»
14 years 4 months ago
BlobSeer: Next-generation data management for large scale infrastructures
As data volumes increase at a high speed in more and more application fields of science, engineering, information services, etc., the challenges posed by data-intensive computing...
Bogdan Nicolae, Gabriel Antoniu, Luc Bougé,...
77
Voted
IPPS
2010
IEEE
14 years 7 months ago
Parallelization of DQMC simulation for strongly correlated electron systems
Abstract--Determinant Quantum Monte Carlo (DQMC) simulation has been widely used to reveal macroscopic properties of strong correlated materials. However, parallelization of the DQ...
Che-Rung Lee, I-Hsin Chung, Zhaojun Bai
EUROSYS
2011
ACM
14 years 1 months ago
Scarlett: coping with skewed content popularity in mapreduce clusters
To improve data availability and resilience MapReduce frameworks use file systems that replicate data uniformly. However, analysis of job logs from a large production cluster show...
Ganesh Ananthanarayanan, Sameer Agarwal, Srikanth ...
61
Voted
SPAA
2009
ACM
15 years 10 months ago
Scalable reader-writer locks
We present three new reader-writer lock algorithms that scale under high read-only contention. Many previous reader-writer locks suffer significant degradation when many readers a...
Yossi Lev, Victor Luchangco, Marek Olszewski