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BMCBI
2011
14 years 6 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
151
Voted
JPDC
2011
219views more  JPDC 2011»
14 years 10 months ago
BlobSeer: Next-generation data management for large scale infrastructures
As data volumes increase at a high speed in more and more application fields of science, engineering, information services, etc., the challenges posed by data-intensive computing...
Bogdan Nicolae, Gabriel Antoniu, Luc Bougé,...
IPPS
2010
IEEE
15 years 1 months ago
Parallelization of DQMC simulation for strongly correlated electron systems
Abstract--Determinant Quantum Monte Carlo (DQMC) simulation has been widely used to reveal macroscopic properties of strong correlated materials. However, parallelization of the DQ...
Che-Rung Lee, I-Hsin Chung, Zhaojun Bai
EUROSYS
2011
ACM
14 years 6 months ago
Scarlett: coping with skewed content popularity in mapreduce clusters
To improve data availability and resilience MapReduce frameworks use file systems that replicate data uniformly. However, analysis of job logs from a large production cluster show...
Ganesh Ananthanarayanan, Sameer Agarwal, Srikanth ...
SPAA
2009
ACM
16 years 3 months ago
Scalable reader-writer locks
We present three new reader-writer lock algorithms that scale under high read-only contention. Many previous reader-writer locks suffer significant degradation when many readers a...
Yossi Lev, Victor Luchangco, Marek Olszewski