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2008
14 years 10 months ago
Info-fuzzy algorithms for mining dynamic data streams
Most data mining algorithms assume static behavior of the incoming data. In the real world, the situation is different and most continuously collected data streams are generated by...
Lior Cohen, Gil Avrahami, Mark Last, Abraham Kande...
BMCBI
2010
117views more  BMCBI 2010»
14 years 10 months ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
BMCBI
2008
104views more  BMCBI 2008»
14 years 10 months ago
Missing value imputation improves clustering and interpretation of gene expression microarray data
Background: Missing values frequently pose problems in gene expression microarray experiments as they can hinder downstream analysis of the datasets. While several missing value i...
Johannes Tuikkala, Laura Elo, Olli Nevalainen, Ter...
BMCBI
2008
214views more  BMCBI 2008»
14 years 10 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2007
158views more  BMCBI 2007»
14 years 10 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...