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AAIM
2007
Springer
106views Algorithms» more  AAIM 2007»
15 years 1 months ago
A New Efficient Algorithm for Computing the Longest Common Subsequence
Abstract. The Longest Common Subsequence (LCS) problem is a classic and well-studied problem in computer science. The LCS problem is a common task in DNA sequence analysis with man...
M. Sohel Rahman, Costas S. Iliopoulos
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
15 years 3 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
SODA
2008
ACM
111views Algorithms» more  SODA 2008»
14 years 11 months ago
On distance to monotonicity and longest increasing subsequence of a data stream
In this paper we consider problems related to the sortedness of a data stream. First we investigate the problem of estimating the distance to monotonicity; given a sequence of len...
Funda Ergün, Hossein Jowhari
FOCS
2007
IEEE
15 years 4 months ago
Lower Bounds on Streaming Algorithms for Approximating the Length of the Longest Increasing Subsequence
We show that any deterministic data-stream algorithm that makes a constant number of passes over the input and gives a constant factor approximation of the length of the longest i...
Anna Gál, Parikshit Gopalan
ICASSP
2011
IEEE
14 years 1 months ago
Subsequence similarity language models
In this work we present the Subsequence Similarity Language Model (S2-LM) which is a new approach to language modeling based on string similarity. As a language model, S2-LM gener...
Juan M. Huerta