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BMCBI
2008
130views more  BMCBI 2008»
14 years 11 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
BMCBI
2006
141views more  BMCBI 2006»
14 years 11 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
BMCBI
2006
111views more  BMCBI 2006»
14 years 11 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
TC
2008
14 years 11 months ago
DRES: Dynamic Range Encoding Scheme for TCAM Coprocessors
One of the most critical resource management issues in the use of ternary content addressable memory (TCAM) for packet classification/filtering is how to effectively support filte...
Hao Che, Zhijun Wang, Kai Zheng, Bin Liu
VLSID
2004
IEEE
209views VLSI» more  VLSID 2004»
15 years 11 months ago
An Architecture for Motion Estimation in the Transform Domain
demanding algorithm of a video encoder. It is known that about 60% ~ 80% of the total computation time is consumed for motion estimation [1]. The second is its high impact on the v...
J. Lee, Narayanan Vijaykrishnan, Mary Jane Irwin, ...