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4OR
2010
14 years 11 months ago
2010
This survey is concerned with the size of perfect formulations for combinatorial optimization problems. By "perfect formulation", we mean a system of linear inequalities...
116
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BMCBI
2008
14 years 11 months ago
2008
Background: Alternative splicing is a major contributor to the diversity of eukaryotic transcriptomes and proteomes. Currently, large scale detection of alternative splicing using...
BIOINFORMATICS
2006
14 years 11 months ago
2006
Motivation: Intervention in a gene regulatory network is used to avoid undesirable states, such as those associated with a disease. Several types of intervention have been studied...
BMCBI
2006
14 years 11 months ago
2006
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
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BMCBI
2007
14 years 11 months ago
2007
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...