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FUIN
2010
136views more  FUIN 2010»
14 years 6 months ago
Modeling Biology using Generic Reactive Animation
Abstract. Complex biological systems involve incorporated behaviors of numerous processes, mechanisms and objects. However, experimental analysis, by its nature, divides biological...
Yaki Setty, Irun R. Cohen, David Harel
SIAMSC
2008
191views more  SIAMSC 2008»
14 years 9 months ago
ORBIT: Optimization by Radial Basis Function Interpolation in Trust-Regions
Abstract. We present a new derivative-free algorithm, ORBIT, for unconstrained local optimization of computationally expensive functions. A trust-region framework using interpolati...
Stefan M. Wild, Rommel G. Regis, Christine A. Shoe...
IPPS
2009
IEEE
15 years 4 months ago
Long time-scale simulations of in vivo diffusion using GPU hardware
To address the problem of performing long time simulations of biochemical pathways under in vivo cellular conditions, we have developed a lattice-based, reaction-diffusion model t...
Elijah Roberts, John E. Stone, Leonardo Sepulveda,...
DCC
2008
IEEE
15 years 9 months ago
From graph states to two-graph states
The name `graph state' is used to describe a certain class of pure quantum state which models a physical structure on which one can perform measurement-based quantum computin...
Constanza Riera, Stéphane Jacob, Matthew G. Parke...
BMCBI
2008
132views more  BMCBI 2008»
14 years 9 months ago
The Average Mutual Information Profile as a Genomic Signature
Background: Occult organizational structures in DNA sequences may hold the key to understanding functional and evolutionary aspects of the DNA molecule. Such structures can also p...
Mark Bauer, Sheldon M. Schuster, Khalid Sayood