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BMCBI
2010
112views more  BMCBI 2010»
14 years 9 months ago
A parameter-adaptive dynamic programming approach for inferring cophylogenies
Background: Coevolutionary systems like hosts and their parasites are commonly used model systems for evolutionary studies. Inferring the coevolutionary history based on given phy...
Daniel Merkle, Martin Middendorf, Nicolas Wieseke
JSC
2006
52views more  JSC 2006»
14 years 9 months ago
Markov bases of three-way tables are arbitrarily complicated
We show the following two universality statements on the entry-ranges and Markov bases of spaces of 3-way contingency tables with fixed 2-margins: (1) For any finite set D of nonn...
Jesús A. De Loera, Shmuel Onn
TMC
2010
179views more  TMC 2010»
14 years 8 months ago
On Fast and Accurate Detection of Unauthorized Wireless Access Points Using Clock Skews
We explore the use of clock skew of a wireless local area network access point (AP) as its fingerprint to detect unauthorized APs quickly and accurately. The main goal behind usi...
Suman Jana, Sneha Kumar Kasera
BMCBI
2010
142views more  BMCBI 2010»
14 years 9 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
BMCBI
2008
123views more  BMCBI 2008»
14 years 9 months ago
Validation of protein models by a neural network approach
Background: The development and improvement of reliable computational methods designed to evaluate the quality of protein models is relevant in the context of protein structure re...
Paolo Mereghetti, Maria Luisa Ganadu, Elena Papale...