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» Maximum likelihood of phylogenetic networks
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ICPADS
2006
IEEE
15 years 5 months ago
Acceleration of Maximum Likelihood Estimation for Tomosynthesis Mammography
Maximum likelihood (ML) estimation is used during tomosynthesis mammography reconstruction. A single reconstruction involves the processing of highresolution projection images, wh...
Juemin Zhang, Waleed Meleis, David R. Kaeli, Tao W...
GECCO
2003
Springer
15 years 5 months ago
Optimizing the Order of Taxon Addition in Phylogenetic Tree Construction Using Genetic Algorithm
Phylogenetics has gained in public favor for the analysis of DNA sequence data as molecular biology has advanced. Among a number of algorithms for phylogenetics, the fastDNAml is c...
Yong-Hyuk Kim, Seung-Kyu Lee, Byung Ro Moon
67
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CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
15 years 3 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
15 years 1 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...
IPPS
2010
IEEE
14 years 9 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis