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RECOMB
2009
Springer
15 years 10 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
COCOON
1998
Springer
15 years 2 months ago
The Colored Sector Search Tree: A Dynamic Data Structure for Efficient High Dimensional Nearest-Foreign-Neighbor Queries
Abstract. In this paper we present the new data structure Colored Sector Search Tree (CSST ) for solving the Nearest-Foreign-Neighbor Query Problem (NFNQP ): Given a set S of n col...
Thomas Graf, V. Kamakoti, N. S. Janaki Latha, C. P...
CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
15 years 3 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
15 years 11 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
SIGGRAPH
1999
ACM
15 years 2 months ago
LDI Tree: A Hierarchical Representation for Image-Based Rendering
Using multiple reference images in 3D image warping has been a challenging problem. Recently, the Layered Depth Image (LDI) was proposed by Shade et al. to merge multiple referenc...
Chun-Fa Chang, Gary Bishop, Anselmo Lastra