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» Metabolic pathways variability and sequence networks compari...
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BMCBI
2008
155views more  BMCBI 2008»
14 years 10 months ago
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Background: Once a new genome is sequenced, one of the important questions is to determine the presence and absence of biological pathways. Analysis of biological pathways in a ge...
Kwangmin Choi, Sun Kim
BMCBI
2006
166views more  BMCBI 2006»
14 years 10 months ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto
BMCBI
2004
89views more  BMCBI 2004»
14 years 10 months ago
Network analysis of metabolic enzyme evolution in Escherichia coli
Background: The two most common models for the evolution of metabolism are the patchwork evolution model, where enzymes are thought to diverge from broad to narrow substrate speci...
Sara Light, Per Kraulis
IEAAIE
2004
Springer
15 years 3 months ago
Cell Modeling Using Agent-Based Formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities. This community is beginning to look at alternatives t...
Ken Webb, Tony White
BMCBI
2007
137views more  BMCBI 2007»
14 years 10 months ago
PlnTFDB: an integrative plant transcription factor database
Background: Transcription factors (TFs) are key regulatory proteins that enhance or repress the transcriptional rate of their target genes by binding to specific promoter regions ...
Diego Mauricio Riaño-Pachón, Sloboda...