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KDD
2004
ACM
209views Data Mining» more  KDD 2004»
16 years 4 days ago
A data mining approach to modeling relationships among categories in image collection
This paper proposes a data mining approach to modeling relationships among categories in image collection. In our approach, with image feature grouping, a visual dictionary is cre...
Ruofei Zhang, Zhongfei (Mark) Zhang, Sandeep Khanz...
BMCBI
2008
128views more  BMCBI 2008»
14 years 12 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2010
141views more  BMCBI 2010»
14 years 12 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
BMCBI
2010
129views more  BMCBI 2010»
14 years 12 months ago
Automatic prediction of catalytic residues by modeling residue structural neighborhood
Background: Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classific...
Elisa Cilia, Andrea Passerini
ALMOB
2008
95views more  ALMOB 2008»
14 years 12 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen