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» Methods for open-box analysis in artificial development
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FLAIRS
2004
14 years 11 months ago
Gene Expression Data Classification with Revised Kernel Partial Least Squares Algorithm
One important feature of the gene expression data is that the number of genes M far exceeds the number of samples N. Standard statistical methods do not work well when N < M. D...
ZhenQiu Liu, Dechang Chen
BMCBI
2011
14 years 5 months ago
Shape-based peak identification for ChIP-Seq
Background: The identification of binding targets for proteins using ChIP-Seq has gained popularity as an alternative to ChIP-chip. Sequencing can, in principle, eliminate artifac...
Valerie Hower, Steven N. Evans, Lior Pachter
BMCBI
2011
14 years 5 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
EVOW
2010
Springer
15 years 3 months ago
Evolutionary Sound Synthesis: Rendering Spectrograms from Cellular Automata Histograms
In this paper we report on the synthesis of sounds using cellular automata, specifically the multitype voter model. The mapping process adopted is based on digital signal processin...
Jaime Serquera, Eduardo R. Miranda
EVOW
2003
Springer
15 years 3 months ago
Chromosomal Breakpoint Detection in Human Cancer
Chromosomal aberrations are differences in DNA sequence copy number of chromosome regions 3 . These differences may be crucial genetic events in the development and progression o...
Kees Jong, Elena Marchiori, Aad van der Vaart, Bau...