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» Microarray Gene Expression Data Analysis
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ICANN
2010
Springer
14 years 10 months ago
Discovery of Exogenous Variables in Data with More Variables Than Observations
Many statistical methods have been proposed to estimate causal models in classical situations with fewer variables than observations. However, modern datasets including gene expres...
Yasuhiro Sogawa, Shohei Shimizu, Aapo Hyvärin...
BMCBI
2006
105views more  BMCBI 2006»
14 years 9 months ago
Integrative investigation of metabolic and transcriptomic data
Background: New analysis methods are being developed to integrate data from transcriptome, proteome, interactome, metabolome, and other investigative approaches. At the same time,...
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ils...
KDD
2006
ACM
142views Data Mining» more  KDD 2006»
15 years 10 months ago
Automatic mining of fruit fly embryo images
We present FEMine, an automatic system for image-based gene expression analysis. We perform experiments on the largest publicly available collection of Drosophila ISH (in situ hyb...
Jia-Yu Pan, André G. R. Balan, Eric P. Xing...
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BMCBI
2011
14 years 4 months ago
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
Background: Alternative splicing (AS) is a process which generates several distinct mRNA isoforms from the same gene by splicing different portions out of the precursor transcript...
Johannes Eichner, Georg Zeller, Sascha Laubinger, ...
BMCBI
2006
166views more  BMCBI 2006»
14 years 9 months ago
bioNMF: a versatile tool for non-negative matrix factorization in biology
Background: In the Bioinformatics field, a great deal of interest has been given to Non-negative matrix factorization technique (NMF), due to its capability of providing new insig...
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Mo...