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» Microarray data mining with visual programming
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BMCBI
2004
131views more  BMCBI 2004»
14 years 9 months ago
A web services choreography scenario for interoperating bioinformatics applications
Background: Very often genome-wide data analysis requires the interoperation of multiple databases and analytic tools. A large number of genome databases and bioinformatics applic...
Remko de Knikker, Youjun Guo, Jin-long Li, Albert ...
94
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ESA
2008
Springer
130views Algorithms» more  ESA 2008»
14 years 11 months ago
Linear Time Planarity Testing and Embedding of Strongly Connected Cyclic Level Graphs
Abstract. A level graph is a directed acyclic graph with a level assignment for each node. Such graphs play a prominent role in graph drawing. They express strict dependencies and ...
Christian Bachmaier, Wolfgang Brunner
BMCBI
2010
144views more  BMCBI 2010»
14 years 9 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...
BMCBI
2010
153views more  BMCBI 2010»
14 years 9 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
MSR
2006
ACM
15 years 3 months ago
Using software birthmarks to identify similar classes and major functionalities
Software birthmarks are unique and native characteristics of every software component. Two components having similar birthmarks indicate that they are similar in functionality, st...
Takeshi Kakimoto, Akito Monden, Yasutaka Kamei, Ha...