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BMCBI
2007
216views more  BMCBI 2007»
14 years 11 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
INTEGRATION
2008
96views more  INTEGRATION 2008»
14 years 11 months ago
Implementation of a thermal management unit for canceling temperature-dependent clock skew variations
Thermal gradients across the die are becoming increasingly prominent as we scale further down into the sub-nanometer regime. While temperature was never a primary concern, its non...
Ashutosh Chakraborty, Karthik Duraisami, Ashoka Vi...
IJFCS
2006
130views more  IJFCS 2006»
14 years 11 months ago
Mealy multiset automata
We introduce the networks of Mealy multiset automata, and study their computational power. The networks of Mealy multiset automata are computationally complete. 1 Learning from Mo...
Gabriel Ciobanu, Viorel Mihai Gontineac
JCC
2008
88views more  JCC 2008»
14 years 11 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
INFFUS
2006
85views more  INFFUS 2006»
14 years 11 months ago
Fusionplex: resolution of data inconsistencies in the integration of heterogeneous information sources
Fusionplex is a system for integrating multiple heterogeneous and autonomous information sources that uses data fusion to resolve factual inconsistencies among the individual sour...
Amihai Motro, Philipp Anokhin