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    BMCBI
    2007
    164views more  BMCBI 2007»
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
    13 years 6 months ago
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
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    Background: The regulation of gene expression is achieved through gene regulatory networks (GRNs) in which collections of genes interact with one another and other substances in a...
    Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping G...
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    JCB
    2006
    114views more  JCB 2006»
    A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
    13 years 6 months ago
    A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
    Download  www.cs.tut.fi
    A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
    Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
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    WILF
    2009
    Springer
    216views Fuzzy Logic» more  WILF 2009»
    Barycentric Algebras and Gene Expression
    14 years 26 days ago
    Barycentric Algebras and Gene Expression
    Download  orion.math.iastate.edu
    Barycentric algebras have seen widespread application in the modeling of convex sets, semilattices, and quantum mechanics. Recently, they were developed further to encompass Boolea...
    Anna B. Romanowska, Jonathan D. H. Smith
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    BMCBI
    2005
    178views more  BMCBI 2005»
    A quantization method based on threshold optimization for microarray short time series
    13 years 6 months ago
    A quantization method based on threshold optimization for microarray short time series
    Download  paduaresearch.cab.unipd.it
    Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
    Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
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    BMCBI
    2005
    127views more  BMCBI 2005»
    Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
    13 years 6 months ago
    Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
    Download  www.biomedcentral.com
    Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
    Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
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