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» Mining Gene Expression Data using Domain Knowledge
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ICWSM
2009
14 years 9 months ago
From Generating to Mining: Automatically Scripting Conversations Using Existing Online Sources
Hearing people argue opposing sides of an issue can be a useful way to understand the topic; however, these debates or conversations often don't exist. Unfortunately, generat...
Nathan D. Nichols, Lisa M. Gandy, Kristian J. Hamm...
BMCBI
2011
14 years 3 months ago
Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Bre
Background: Elucidating the exact relationship between gene copy number and expression would enable identification of regulatory mechanisms of abnormal gene expression and biologi...
Hiroko K. Solvang, Ole Christian Lingjærde, ...
ICDM
2006
IEEE
176views Data Mining» more  ICDM 2006»
15 years 5 months ago
Razor: mining distance-constrained embedded subtrees
Due to their capability for expressing semantics and relationships among data objects, semi-structured documents have become a common way of representing domain knowledge. Compari...
Henry Tan, Tharam S. Dillon, Fedja Hadzic, Elizabe...
PAKDD
2005
ACM
180views Data Mining» more  PAKDD 2005»
15 years 5 months ago
Conditional Random Fields for Transmembrane Helix Prediction
Abstract. It is estimated that 20% of genes in the human genome encode for integral membrane proteins (IMPs) and some estimates are much higher. IMPs control a broad range of event...
Lior Lukov, Sanjay Chawla, W. Bret Church
BMCBI
2006
143views more  BMCBI 2006»
14 years 12 months ago
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms
Background: Microarray technology produces gene expression data on a genomic scale for an endless variety of organisms and conditions. However, this vast amount of information nee...
Rainer König, Gunnar Schramm, Marcus Oswald, ...