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BMCBI
2004
229views more  BMCBI 2004»
14 years 11 months ago
Automatic annotation of protein motif function with Gene Ontology terms
Background: Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern search...
Xinghua Lu, Chengxiang Zhai, Vanathi Gopalakrishna...
PAKDD
2005
ACM
180views Data Mining» more  PAKDD 2005»
15 years 5 months ago
Conditional Random Fields for Transmembrane Helix Prediction
Abstract. It is estimated that 20% of genes in the human genome encode for integral membrane proteins (IMPs) and some estimates are much higher. IMPs control a broad range of event...
Lior Lukov, Sanjay Chawla, W. Bret Church
80
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NAR
2006
88views more  NAR 2006»
14 years 11 months ago
RMD: a rice mutant database for functional analysis of the rice genome
Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap syste...
Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xi...
JASIS
2007
101views more  JASIS 2007»
14 years 11 months ago
Mining Web functional dependencies for flexible information access
We present an approach to enhancing information access through web structure mining in contrast to traditional approaches involving usage mining. Specifically, we mine the hardwi...
Saverio Perugini, Naren Ramakrishnan
BMCBI
2004
144views more  BMCBI 2004»
14 years 11 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...