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BMCBI
2005
107views more  BMCBI 2005»
15 years 1 months ago
Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multip
Background: Predicting the subcellular localization of proteins is important for determining the function of proteins. Previous works focused on predicting protein localization in...
Jiren Wang, Wing-Kin Sung, Arun Krishnan, Kuo-Bin ...
IJCAI
2007
15 years 3 months ago
A Subspace Kernel for Nonlinear Feature Extraction
Kernel based nonlinear Feature Extraction (KFE) or dimensionality reduction is a widely used pre-processing step in pattern classification and data mining tasks. Given a positive...
Mingrui Wu, Jason D. R. Farquhar
BMCBI
2007
153views more  BMCBI 2007»
15 years 2 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
BMCBI
2006
178views more  BMCBI 2006»
15 years 1 months ago
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
Background: The Gene Ontology has become an extremely useful tool for the analysis of genomic data and structuring of biological knowledge. Several excellent software tools for na...
Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Hut...
SDM
2004
SIAM
212views Data Mining» more  SDM 2004»
15 years 3 months ago
Clustering with Bregman Divergences
A wide variety of distortion functions, such as squared Euclidean distance, Mahalanobis distance, Itakura-Saito distance and relative entropy, have been used for clustering. In th...
Arindam Banerjee, Srujana Merugu, Inderjit S. Dhil...