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» Mining Patents Using Molecular Similarity Search
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99
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RECOMB
2009
Springer
16 years 1 months ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
SGAI
2007
Springer
15 years 6 months ago
Visualization and Grouping of Graph Patterns in Molecular Databases
Mining subgraphs is an area of research where we have a given set of graphs, and we search for (connected) subgraphs contained in these graphs. In this paper we focus on the analy...
Edgar H. de Graaf, Walter A. Kosters, Joost N. Kok...
98
Voted
ASAP
2004
IEEE
124views Hardware» more  ASAP 2004»
15 years 4 months ago
Biosequence Similarity Search on the Mercury System
Biosequence similarity search is an important application in modern molecular biology. Search algorithms aim to identify sets of sequences whose extensional similarity suggests a c...
Praveen Krishnamurthy, Jeremy Buhler, Roger D. Cha...
BMCBI
2004
150views more  BMCBI 2004»
15 years 8 days ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
156
Voted
WWW
2007
ACM
16 years 1 months ago
Measuring semantic similarity between words using web search engines
Semantic similarity measures play important roles in information retrieval and Natural Language Processing. Previous work in semantic web-related applications such as community mi...
Danushka Bollegala, Yutaka Matsuo, Mitsuru Ishizuk...