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» Mining Protein Sequences for Motifs
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CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
15 years 2 months ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga
BMCBI
2010
148views more  BMCBI 2010»
14 years 9 months ago
Analysis of interactions between ribosomal proteins and RNA structural motifs
Background: One important goal of structural bioinformatics is to recognize and predict the interactions between protein binding sites and RNA. Recently, a comprehensive analysis ...
Giovanni Ciriello, Claudio Gallina, Concettina Gue...
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KDD
2000
ACM
107views Data Mining» more  KDD 2000»
15 years 1 months ago
Genome scale prediction of protein functional class from sequence using data mining
Ross D. King, Andreas Karwath, Amanda Clare, Luc D...
BIBE
2005
IEEE
15 years 3 months ago
Improved Phylogenetic Motif Detection Using Parsimony
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
Usman Roshan, Dennis R. Livesay, David La
GECCO
2009
Springer
173views Optimization» more  GECCO 2009»
15 years 4 months ago
Creating regular expressions as mRNA motifs with GP to predict human exon splitting
Low correlation between mRNA concentrations measured at different locations for the same exon show many current Ensembl exon definitions are incomplete. Automatically created pa...
William B. Langdon, Joanna Rowsell, Andrew P. Harr...