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» Mining Protein Sequences for Motifs
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BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
SDM
2009
SIAM
161views Data Mining» more  SDM 2009»
15 years 6 months ago
Polynomial-Delay and Polynomial-Space Algorithms for Mining Closed Sequences, Graphs, and Pictures in Accessible Set Systems.
In this paper, we study efficient closed pattern mining in a general framework of set systems, which are families of subsets ordered by set-inclusion with a certain structure, pro...
Hiroki Arimura, Takeaki Uno
BMCBI
2005
132views more  BMCBI 2005»
14 years 9 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
CIKM
2005
Springer
15 years 3 months ago
WAM-Miner: in the search of web access motifs from historical web log data
Existing web usage mining techniques focus only on discovering knowledge based on the statistical measures obtained from the static characteristics of web usage data. They do not ...
Qiankun Zhao, Sourav S. Bhowmick, Le Gruenwald
75
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BMCBI
2008
94views more  BMCBI 2008»
14 years 9 months ago
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
Background: Malaria parasite secretes various proteins in infected RBC for its growth and survival. Thus identification of these secretory proteins is important for developing vac...
Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C...