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» Mining Protein Sequences for Motifs
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BMCBI
2008
153views more  BMCBI 2008»
14 years 9 months ago
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Background: The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 1...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...
BMCBI
2004
115views more  BMCBI 2004»
14 years 9 months ago
An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage
Background: Eukaryotic whole genome sequences are accumulating at an impressive rate. Effective methods for comparing multiple whole eukaryotic genomes on a large scale are needed...
Gary W. Stuart, Michael W. Berry
ICASSP
2011
IEEE
14 years 1 months ago
Towards robust word discovery by self-similarity matrix comparison
Word discovery is the task of discovering and collecting occurrences of repeating words in the absence of prior acoustic and linguistic knowledge, or training material. The capabi...
Armando Muscariello, Guillaume Gravier, Fré...
BMCBI
2007
142views more  BMCBI 2007»
14 years 9 months ago
Improving model construction of profile HMMs for remote homology detection through structural alignment
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Juliana S. Bernardes, Alberto M. R. Dávila,...
JCB
2006
138views more  JCB 2006»
14 years 9 months ago
Recognition and Classification of Histones Using Support Vector Machine
Histones are DNA-binding proteins found in the chromatin of all eukaryotic cells. They are highly conserved and can be grouped into five major classes: H1/H5, H2A, H2B, H3, and H4...
Manoj Bhasin, Ellis L. Reinherz, Pedro A. Reche