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» Mining protein networks for synthetic genetic interactions
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BMCBI
2008
118views more  BMCBI 2008»
14 years 9 months ago
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Background: With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few appro...
Grace S. Shieh, Chung-Ming Chen, Ching-Yun Yu, Jui...
TCBB
2010
163views more  TCBB 2010»
14 years 4 months ago
Classification of Protein-Protein Interaction Full-Text Documents Using Text and Citation Network Features
Abstract--We participated (as Team 9) in the Article Classification Task of the Biocreative II.5 Challenge: binary classification of fulltext documents relevant for protein-protein...
Artemy Kolchinsky, Alaa Abi-Haidar, Jasleen Kaur, ...
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BMCBI
2007
130views more  BMCBI 2007»
14 years 9 months ago
A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression da
Background: Proteins are the primary regulatory agents of transcription even though mRNA expression data alone, from systems like DNA microarrays, are widely used. In addition, th...
Reuben Thomas, Carlos J. Paredes, Sanjay Mehrotra,...
BMCBI
2007
166views more  BMCBI 2007»
14 years 9 months ago
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks
Background: A Signal transduction pathway is the chain of processes by which a cell converts an extracellular signal into a response. In most unicellular organisms, the number of ...
Gürkan Bebek, Jiong Yang
VISUALIZATION
2002
IEEE
15 years 2 months ago
GeneVis: Visualization Tools for Genetic Regulatory Network Dynamics
GeneVis provides a visual environment for exploring the dynamics of genetic regulatory networks. At present time, genetic regulation is the focus of intensive research worldwide, ...
Charles A. H. Baker, M. Sheelagh T. Carpendale, Pr...