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» Mining protein networks for synthetic genetic interactions
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RECOMB
2007
Springer
16 years 1 days ago
A Feature-Based Approach to Modeling Protein-DNA Interactions
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
Eilon Sharon, Eran Segal
JCB
2002
131views more  JCB 2002»
14 years 11 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong
CIBCB
2007
IEEE
15 years 3 months ago
Genetic Regulatory Network Modeling Using Network Component Analysis and Fuzzy Clustering
Gene regulatory network model is the most widely used mechanism to model and predict the behavior of living organisms. Network Component Analysis (NCA) as an emerging issue for unc...
Fatemeh Bakouie, Mohammad Hassan Moradi
TSMC
2010
14 years 6 months ago
On Robust Stability of Stochastic Genetic Regulatory Networks With Time Delays: A Delay Fractioning Approach
Robust stability serves as an important regulation mechanism in system biology and synthetic biology. In this paper, the robust stability analysis problem is investigated for a cla...
Yao Wang, Zidong Wang, Jinling Liang
ICASSP
2011
IEEE
14 years 3 months ago
Fast network querying algorithm for searching large-scale biological networks
Network querying aims to search a large network for subnetwork regions that are similar to a given query network. In this paper, we propose a novel algorithm for querying large sc...
Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon