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» Model gene network by semi-fixed Bayesian network
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BIB
2010
129views more  BIB 2010»
15 years 2 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
ECML
2006
Springer
15 years 5 months ago
Fisher Kernels for Relational Data
Abstract. Combining statistical and relational learning receives currently a lot of attention. The majority of statistical relational learning approaches focus on density estimatio...
Uwe Dick, Kristian Kersting
132
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BMCBI
2007
158views more  BMCBI 2007»
15 years 2 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...
BMCBI
2010
191views more  BMCBI 2010»
15 years 2 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
BMCBI
2004
114views more  BMCBI 2004»
15 years 1 months ago
Extending the mutual information measure to rank inferred literature relationships
Background: Within the peer-reviewed literature, associations between two things are not always recognized until commonalities between them become apparent. These commonalities ca...
Jonathan D. Wren