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» Modeling Gene Networks using Fuzzy Logic
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ICTAC
2005
Springer
15 years 9 months ago
Stochastic Analysis of Graph Transformation Systems: A Case Study in P2P Networks
In distributed and mobile systems with volatile bandwidth and fragile connectivity, non-functional aspects like performance and reliability become more and more important. To forma...
Reiko Heckel
127
Voted
FMSD
2006
131views more  FMSD 2006»
15 years 4 months ago
Specification and analysis of the AER/NCA active network protocol suite in Real-Time Maude
This paper describes the application of the Real-Time Maude tool and the Maude formal methodology to the specification and analysis of the AER/NCA suite of active network multicast...
Peter Csaba Ölveczky, José Meseguer, C...
133
Voted
BMCBI
2010
146views more  BMCBI 2010»
15 years 4 months ago
Booly: a new data integration platform
Background: Data integration is an escalating problem in bioinformatics. We have developed a web tool and warehousing system, Booly, that features a simple yet flexible data model...
Long H. Do, Francisco F. Esteves, Harvey J. Karten...
RECOMB
2010
Springer
15 years 2 months ago
Predicting Nucleosome Positioning Using Multiple Evidence Tracks
Abstract. We describe a probabilistic model, implemented as a dynamic Bayesian network, that can be used to predict nucleosome positioning along a chromosome based on one or more g...
Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, ...
BMCBI
2010
135views more  BMCBI 2010»
15 years 4 months ago
Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization
Background: Oligonucleotide arrays have become one of the most widely used high-throughput tools in biology. Due to their sensitivity to experimental conditions, normalization is ...
Marc Hulsman, Anouk Mentink, Eugene P. van Someren...