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» Modeling Gene Networks using Fuzzy Logic
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ECCB
2008
IEEE
15 years 4 months ago
Temporal logic patterns for querying dynamic models of cellular interaction networks
Abstract: Models of the dynamics of cellular interaction networks have become increasingly larger in recent years. Formal verification based on model checking provides a powerful t...
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu,...
BIOINFORMATICS
2006
118views more  BIOINFORMATICS 2006»
15 years 4 months ago
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription
Motivation Quantitative estimation of the regulatory relationship between transcription factors and genes is a fundamental stepping stone when trying to develop models of cellular...
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrenc...
CISIS
2009
IEEE
15 years 11 months ago
A Nonmonotonic Logical Approach for Modelling and Revising Metabolic Networks
—This paper describes a new logic-based approach for representing and reasoning about metabolic networks. First it shows how biological pathways can be elegantly represented in a...
Oliver Ray, Ken E. Whelan, Ross D. King
HYBRID
2001
Springer
15 years 8 months ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
ISVLSI
2008
IEEE
142views VLSI» more  ISVLSI 2008»
15 years 10 months ago
A Fuzzy Approach for Variation Aware Buffer Insertion and Driver Sizing
In nanometer regime, the effects of process variations are dominating circuit performance, power and reliability of circuits. Hence, it is important to properly manage variation e...
Venkataraman Mahalingam, Nagarajan Ranganathan