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RECONFIG
2009
IEEE
182views VLSI» more  RECONFIG 2009»
15 years 9 months ago
Scalability Studies of the BLASTn Scan and Ungapped Extension Functions
BLASTn is a ubiquitous tool used for large scale DNA analysis. Detailed profiling tests reveal that the most computationally intensive sections of the BLASTn algorithm are the sc...
Siddhartha Datta, Ron Sass
BMCBI
2006
165views more  BMCBI 2006»
15 years 2 months ago
Validation and functional annotation of expression-based clusters based on gene ontology
Background: The biological interpretation of large-scale gene expression data is one of the paramount challenges in current bioinformatics. In particular, placing the results in t...
Ralf Steuer, Peter Humburg, Joachim Selbig
VLDB
2007
ACM
104views Database» more  VLDB 2007»
16 years 2 months ago
Extending XQuery with Window Functions
This paper presents two extensions for XQuery. The first extension allows the definition and processing of different kinds of windows over an input sequence; i.e., tumbling, slidi...
Irina Botan, Peter M. Fischer, Daniela Florescu, D...
IJCNLP
2005
Springer
15 years 7 months ago
Improving Korean Speech Acts Analysis by Using Shrinkage and Discourse Stack
Abstract. A speech act is a linguistic action intended by a speaker. It is important to analyze the speech act for the dialogue understanding system because the speech act of an ut...
Kyungsun Kim, Youngjoong Ko, Jungyun Seo
BMCBI
2005
151views more  BMCBI 2005»
15 years 2 months ago
stam - a Bioconductor compliant R package for structured analysis of microarray data
Background: Genome wide microarray studies have the potential to unveil novel disease entities. Clinically homogeneous groups of patients can have diverse gene expression profiles...
Claudio Lottaz, Rainer Spang