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BMCBI
2010
160views more  BMCBI 2010»
14 years 10 months ago
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
Background: Protein-protein interactions play a key role in biological processes of proteins within a cell. Recent high-throughput techniques have generated protein-protein intera...
Young-Rae Cho, Aidong Zhang
BMCBI
2007
172views more  BMCBI 2007»
14 years 10 months ago
msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
Background: Although testing for simultaneous divergence (vicariance) across different population-pairs that span the same barrier to gene flow is of central importance to evoluti...
Michael J. Hickerson, Eli Stahl, Naoki Takebayashi
BMCBI
2008
104views more  BMCBI 2008»
14 years 10 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...
KAIS
2008
221views more  KAIS 2008»
14 years 10 months ago
Forecasting skewed biased stochastic ozone days: analyses, solutions and beyond
Much work on skewed, stochastic, high dimensional, and biased datasets usually implicitly solve each problem separately. Recently, we have been approached by Texas Commission on En...
Kun Zhang, Wei Fan
SIAMCOMP
2008
167views more  SIAMCOMP 2008»
14 years 9 months ago
Approximation Algorithms for Data Placement Problems
We develop approximation algorithms for the problem of placing replicated data in arbitrary networks, where the nodes may both issue requests for data objects and have capacity fo...
Ivan D. Baev, Rajmohan Rajaraman, Chaitanya Swamy