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BMCBI
2007
141views more  BMCBI 2007»
14 years 10 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad
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BMCBI
2007
197views more  BMCBI 2007»
14 years 10 months ago
Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
Background: Boolean network (BN) modeling is a commonly used method for constructing gene regulatory networks from time series microarray data. However, its major drawback is that...
Haseong Kim, Jae K. Lee, Taesung Park
BMCBI
2008
111views more  BMCBI 2008»
14 years 10 months ago
Molecular docking studies of dithionitrobenzoic acid and its related compounds to protein disulfide isomerase: computational scr
Background: Entry of HIV-1 into human lymphoid requires activities of viral envelope glycoproteins gp120 and gp41, and two host-cell proteins, the primary receptor CD4 and a chemo...
Uthaman Gowthaman, Mannu Jayakanthan, Durai Sundar
BMCBI
2006
92views more  BMCBI 2006»
14 years 10 months ago
Predicting survival outcomes using subsets of significant genes in prognostic marker studies with microarrays
Background: Genetic markers hold great promise for refining our ability to establish precise prognostic prediction for diseases. The development of comprehensive gene expression m...
Shigeyuki Matsui
IANDC
2008
114views more  IANDC 2008»
14 years 10 months ago
Generalizing the Paige-Tarjan algorithm by abstract interpretation
act Interpretation Francesco Ranzato and Francesco Tapparo Dipartimento di Matematica Pura ed Applicata, Universit`a di Padova, Italy The Paige and Tarjan algorithm (PT) for comp...
Francesco Ranzato, Francesco Tapparo
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