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ICA3PP
2005
Springer
15 years 8 months ago
GridMD: Program Architecture for Distributed Molecular Simulation
In the present work we describe architectural concepts of the distributed molecular simulation package GridMD. The main purpose of this work is to underline the construction patter...
Ilya Valuev
109
Voted
ENVSOFT
2006
72views more  ENVSOFT 2006»
15 years 3 months ago
Integrating legacy components into a software system for storm sewer simulation
This paper presents an approach that integrates a legacy component into a software system for storm sewer simulation. The legacy component employed here is the Storm Water Managem...
Shiu-Shin Lin, Shang-Hsien Hsieh, Jan-Tai Kuo, Yin...
146
Voted
BMCBI
2011
14 years 10 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
WSC
2004
15 years 4 months ago
A Case Study in Meta-Simulation Design and Performance Analysis for Large-Scale Networks
Simulation and Emulation techniques are fundamental to aid the process of large-scale protocol design and network operations. However, the results from these techniques are often ...
David W. Bauer, Garrett R. Yaun, Christopher D. Ca...
BMCBI
2006
131views more  BMCBI 2006»
15 years 3 months ago
SIMAGE: simulation of DNA-microarray gene expression data
Background: Simulation of DNA-microarray data serves at least three purposes: (i) optimizing the design of an intended DNA microarray experiment, (ii) comparing existing pre-proce...
Casper J. Albers, Ritsert C. Jansen, Jan Kok, Osca...