We describe an approach to modeling biological networks by action languages via answer set programming. To this end, we propose an action language for modeling biological networks...
Steve Dworschak, Susanne Grell, Victoria J. Nikifo...
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Abstract. BioModel Analyzer (bma) is a tool for modeling and analyzing biological networks. Designed with a lightweight graphical user interface, the tool facilitates usage for bio...
David Benque, Sam Bourton, Caitlin Cockerton, Byro...
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
A major source of information (often the most crucial and informative part) in scholarly articles from scientific journals, proceedings and books are the figures that directly pro...
Amr Ahmed, Eric P. Xing, William W. Cohen, Robert ...