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» Modelling Coordination in Biological Systems
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RP
2009
Springer
136views Control Systems» more  RP 2009»
15 years 4 months ago
Probabilistic Model Checking of Biological Systems with Uncertain Kinetic Rates
We present an abstraction of the probabilistic semantics of Multiset Rewriting to formally express systems of reactions with uncertain kinetic rates. This allows biological systems...
Roberto Barbuti, Francesca Levi, Paolo Milazzo, Gu...
POPL
2008
ACM
15 years 10 months ago
Systems biology, models, and concurrency
Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will like...
Walter Fontana
JMLR
2008
127views more  JMLR 2008»
14 years 9 months ago
Incremental Identification of Qualitative Models of Biological Systems using Inductive Logic Programming
The use of computational models is increasingly expected to play an important role in predicting the behaviour of biological systems. Models are being sought at different scales o...
Ashwin Srinivasan, Ross D. King
101
Voted
GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
14 years 10 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...
ICTAI
2008
IEEE
15 years 4 months ago
The System BioC for Reasoning about Biological Models in Action Language C
We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
Steve Dworschak, Torsten Grote, Arne König, T...