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» Modelling Gene Regulatory Networks
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RECOMB
2004
Springer
15 years 10 months ago
Probabilistic discovery of overlapping cellular processes and their regulation
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...
Alexis Battle, Eran Segal, Daphne Koller
BIOCOMP
2009
14 years 11 months ago
Inferring Gene Regulatory Networks from Asynchronous Microarray Data
Modern approaches to treating genetic disorders, cancers and even epidemics rely on a detailed understanding of the underlying gene signaling network. Previous work has used time s...
David Oviatt, Mark J. Clement, Quinn Snell, Kennet...
BMCBI
2006
95views more  BMCBI 2006»
14 years 10 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
ICES
2003
Springer
114views Hardware» more  ICES 2003»
15 years 3 months ago
Evolving Fractal Proteins
The fractal protein is a new concept for improving evolvability, scalability, exploitability and providing a rich medium for evolution. Here the idea of fractal proteins is introdu...
Peter J. Bentley
CEC
2003
IEEE
15 years 3 months ago
Transcription and evolution of a virtual bacteria culture
Abstract- This paper describes implementation details and results from a simulated multi-agent bacteria ecosystem. Each bacterium is encoded on a DNA-like genome, specifying the ge...
Ricardo M. Hoar, Joanne K. Penner, Christian Jacob