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» Models and Methods in Comparative Genomics
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135
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BMCBI
2005
87views more  BMCBI 2005»
15 years 3 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
144
Voted
ICPR
2006
IEEE
16 years 4 months ago
Combining Generative and Discriminative Methods for Pixel Classification with Multi-Conditional Learning
It is possible to broadly characterize two approaches to probabilistic modeling in terms of generative and discriminative methods. Provided with sufficient training data the discr...
B. Michael Kelm, Chris Pal, Andrew McCallum
168
Voted
BMCBI
2005
132views more  BMCBI 2005»
15 years 3 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
175
Voted
BMCBI
2008
134views more  BMCBI 2008»
15 years 3 months ago
Identification of transcription factor contexts in literature using machine learning approaches
Background: Availability of information about transcription factors (TFs) is crucial for genome biology, as TFs play a central role in the regulation of gene expression. While man...
Hui Yang, Goran Nenadic, John A. Keane
JCB
2006
140views more  JCB 2006»
15 years 3 months ago
HAPLOFREQ-Estimating Haplotype Frequencies Efficiently
A commonly used tool in disease association studies is the search for discrepancies between the haplotype distribution in the case and control populations. In order to find this d...
Eran Halperin, Elad Hazan